Documents

Project GANTT chart

A table breaking down the work packages, identifying the project leads and detailing the phases and milestones of the work packages.

Deliverables

D1.1 - Periodic Report 1

Lead: USFD
Due: PM20
Date: September 2017
Submitted: Yes
Dissemination: Confidential

D1.2 - Periodic Report 2

Lead: USFD
Due: PM38
Date: March 2019
Submitted: Yes
Dissemination: Confidential

D1.3 - Final Report

Lead: USFD
Due: PM38
Date: March 2019
Submitted:
Dissemination: Confidential

D2.1 - Data warehouse and data publication suite requirements and functionality check

Lead: STHFT
Due: PM03
Date: April 2016
Submitted: Yes
Dissemination: Confidential

D2.2 - Analysis of technologies for infrastructure: recommendations for design

Lead: CYFRONET
Due: PM04
Date: May 2016
Submitted: Yes
Dissemination: Public

Download report (PDF, 3MB)

D2.3 - Data management software deployment and training workshop and report

Lead: DHZB
Due: PM08
Date: September 2016
Submitted: Yes
Dissemination: Public

Download report (PDF, 2MB)

D2.4 - Beta release of the infrastructure platform

Lead: CYFRONET
Due: PM15
Date: April 2017
Submitted: Yes
Dissemination: Confidential

D2.5 - Candidate release of the infrastructure platform

Lead: CYFRONET
Due: PM30
Date: July 2018
Submitted: Yes
Dissemination: Confidential

D3.1 - Software Components Specifications

Lead: PHILIPS
Due: PM04
Date: May 2016
Submitted: Yes
Dissemination: Public

Download report (PDF, 2.4MB)

D3.2 - Software Components Beta Release

Lead: PHILIPS
Due: PM15
Date: April 2017
Submitted: Yes
Dissemination: Confidential

D3.3 - Reduced Order Modelling Tools Operations Manual

Lead: ANSYS
Due: PM24
Date: January 2018
Submitted: Yes
Dissemination: Confidential

D3.4 - Software Components Candidate Release

Lead: PEN (PHILIPS)
Due: PM30
Date: July 2018
Submitted: Yes
Dissemination: Confidential

D4.1 - Context-Specific Digital Patient Definition (Valve Assessment and Intervention)

Lead: DHZB
Due: PM03
Date: April 2016
Submitted: Yes
Dissemination: Public

Download report (PDF, 1.4MB)

D4.2 - Clinical Cohort and Inclusion Criteria Specification

Lead: DHZB
Due: PM04
Date: May 2016
Submitted: Yes
Dissemination: Public

Download report (PDF, 1.2MB)

D4.3 - Data availability status report

Lead: DHZB
Due: PM15
Date: April 2017
Submitted: Yes
Dissemination: Public

Download report (PDF, 1.4MB)

D4.4 - Literature and Guidelines Analysis and Recommendations Report

Lead: PEN
Due: PM15
Date: April 2017
Submitted: Yes
Dissemination: Public

Download report (PDF, 1.7MB)

D4.5 - Activity Monitoring Hardware Deployment and Testing Report

Lead: UBRIS
Due: PM15
Date: April 2017
Submitted: Yes
Dissemination: Confidential

D4.6 - Activity Monitoring Data Analysis

Lead: UBRIS
Due: PM28
Date: May 2018
Submitted: Yes
Dissemination: Confidential

D4.7 - Comprehensive data summary and review

Lead: DHZB
Due: PM30
Date: July 2018
Submitted: Yes
Dissemination: Public

Download report (PDF, 2MB)

D5.1 - Decision Support System Specification

Lead: THERENVA
Due: PM06
Date: July 2016
Submitted: Yes
Dissemination: Public

Download report (PDF, 3MB)

D5.2 - Decision Support System Beta Release

Lead: THERENVA
Due: PM21
Date: October 2017
Submitted: Yes
Dissemination: Confidential

D5.3 - Case-Based Reasoning Module

Lead: UR1-LTSI
Due: PM21
Date: October 2017
Submitted: Yes
Dissemination: Confidential

D5.4 - Decision Support System Candidate Release

Lead: THERENVA
Due: PM32
Date: September 2018
Submitted: Yes
Dissemination: Confidential

D6.1 - Model-based Data Augmentation Report

Lead: USFD
Due: PM28
Date: May 2018
Submitted: Yes
Dissemination: Public

Download report (PDF, 1.9MB)

D6.2 - Model-based Learning Report

Lead: PEN
Due: PM28
Date: June 2018
Submitted: Yes
Dissemination: Public

Download report (PDF, 1.5MB)

D6.3 - Final DSS Evaluation Report

Lead: DHZB
Due: PM36
Date: January 2019
Submitted: Yes
Dissemination: Confidential

D6.4 - Platform Evaluation Report

Lead: CYFRONET
Due: PM36
Date: January 2019
Submitted: Yes
Dissemination: Confidential

D7.1 - Initial report on dissemination exploitation and regulation

Lead: THERENVA
Due: PM12
Date: January 2017
Submitted: Yes
Dissemination: Confidential

D7.2 - Interim report on dissemination exploitation and regulation

Lead: THERENVA
Due: PM24
Date: January 2018
Submitted: Yes
Dissemination: Confidential

D7.3 - Final report on dissemination exploitation and regulation

Lead: THERENVA
Due: PM36
Date: January 2019
Submitted: Yes
Dissemination: Confidential

Publications

Journal publications from the EurValve project

M Kasztelnik, E Coto, M Bubak, M Malawski, P Nowakowski, J Arenas, A Saglimbeni, D Testi, A F Frangi, Support for Taverna workflows in the VPH-Share cloud platform, Computer Methods and Programs in Biomedicine, 146 (2017) 37–46.

J Weese, A Lungu, J Peters, F M Weber, I Waechter-Stehle and D R Hose, CFD- and Bernoulli-based pressure drop estimates: A comparison using patient anatomies from heart and aortic valve segmentation of CT images, Medical Physics, 44(6), 2281-2292.

P Nowakowski, M Bubak, T Bartyński, T Gubała, D Harężlak, M Kasztelnik, M Malawski and J Meizner, Cloud computing infrastructure for the VPH community, Journal of Computational Science, Volume 24, January 2018.

X Fafoutis, A Vafeas, B Janko, R S Sherratt, J Pope, A Elsts, E Mellios, G Hilton, G Oikonomou, R Piechocki and I Craddock, Designing Wearable Sensing Platforms for Healthcare in a Residential Environment, EAI Endorsed Transactions on Pervasive Health and Technology, 10.4108/eai.7-9-2017.153063.

A Crozier, C M Augustin, A Neic, A J Prassl, M Holler, T E Fastl, A Hennemuth, K Bredies, T Kuehne, M J Bishop, S A Niederer and G Plank, Image-Based Personalisation of Cardiac Anatomy for Coupled Electromechanical Modelling, Annals of Biomedical Engineering, 10.1007/s10439-015-1474-5.

R McConville, D Byrne, I Craddock, R Piechocki, J Pope, R Santos-Rodriguez, A dataset for room level indoor localisation using a smart home in a box, Data in Brief 2019, https://doi.org/10.1016/j.dib.2019.01.040

Conference publications from the EurValve project

M Bubak, VPH applications in the cloud with the Atmosphere platform – lessons learned, VPH2016, September 2016.

P Nowakowski, M Bubak, T Bartyński, D Harężlak, M Kasztelnik, M Malawski, J Meizner, VPH applications in the cloud with the Atmosphere platform – lessons learned, Virtual Physiological Human 2016 Conference, September 2016.

M Bubak, T Bartynski, T Gubala, D Harezlak, M Kasztelnik, M Malawski, J Meizner and P Nowakowski, Towards Model Execution Environment for Investigation of Heart Valve Diseases (PDF, 335KB), CGW Workshop 2016, October 2016.

K Czechowicz, Computational modelling for heart valve surgery – The Eurvalve project, Department Research in progress talk, January 2017.

M Bubak, D Harężlak, S Wood, T Bartyński, T Gubala, M Kasztelnik, M Malawski, J Meizner, P Nowakowski, Data Management System for Investigation of Heart Valve Diseases, Workshop on Cloud Services for Synchronisation and Sharing, Workshop on Cloud Services for Synchronisation and Sharing, February 2017.

R Meiburg, Personalised Estimation Methods for Trans-Catheter Aortic Valve Implantation Support, 6th Dutch Bio-Medical Engineering Conference, January 2017.

P Lawford, Modelling of diseased heart valves, Insigneo Showcase 2017, May 2017.

K Czechowicz, Computational modelling for heart valve surgery, Insigneo Showcase 2017, May 2017.

M Bubak et al, Semantics, Knowledge and Grids on Big Data in 2017, Beijing China, August 2017

H Feuillâtre, V Auffret, M Castro, H Le Breton, M Garreau and P Haigron, Study of similarity measures for Case-Based Reasoning in Transcatheter Aortic Valve Implantation, Computing in Cardiology, September 2017.

D R Hose, Towards a Computational Decision Support System for Valve Interventions: the EurValve Project, Bastia, September 2017.

J Pope, R McConville, M Kozlowski, X Fafoutis, R Santos-Rodriguez, R Piechocki and I Craddock, SPHERE in a Box: Practical and Scalable EurValve Activity Monitoring Smart Home Kit (PDF, 2MB), Conference: 42nd IEEE Conference, October 2017.

K McCormack, ‘EurValve’ as a Map for Pervasive Computational Healthcare (PDF, 2.6MB), GCW Workshop 2017, October 2017.

K Czechowicz and D R Hose, Minimal Computational Models for Characterisation of Heart Valve Interventions: Preliminary Evaluation of Model Personalization Process (PDF, 2.6MB), GCW Workshop 2017, October 2017,

H Feuillâtre, V Auffret, M Castro, H Le Breton, M Garreau, P Haigron, Influence of Similarity Measures in Case-Based Reasoning for the Treatment of Valvular Heart Disease (PDF, 2.6MB), GCW Workshop 2017, October 2017.

R McConville, J Pope, R Santos-Rodriguez, R Piechocki and I Craddock, Towards Measuring Activity Levels with a Smart Home in a Box (PDF, 2.6MB), GCW Workshop 2017, October 2017.

R Meiburg, M C M Rutten, F N van de Vosse, Uncertainty in Model-Based Treatment Decision Support: Applied to Aortic Stenosis (PDF, 2.6MB), GCW Workshop 2017, October 2017.

M Lenga, T Wekel, J Weese, Shape-Driven Dynamic Valve Segmentation for Cardiac TEE Ultrasound Images (PDF, 2.6MB), GCW Workshop 2017, October 2017.

D A Silva Soto and S M Wood, Architecture for Managing and Querying Collaborative Datasets (PDF, 2.6MB), GCW Workshop 2017, October 2017.

J Meizner, M Bubak, T Bartyński, T Gubała, D Harężlak, M Kasztelnik, M Malawski, P Nowakowski, Advanced Security Services for Computer Simulation Research in Medicine (PDF, 2.6MB), GCW Workshop 2017, October 2017.

M Bubak, T Bartyński, T Gubała, D Harężlak, M Kasztelnik, M Malawski, J Meizner, P Nowakowski, EurValve Model Execution Environment in Operation (PDF, 2.6MB), GCW Workshop 2017, October 2017.

D R Hose, Computational Haemodynamics: challenges, opportunities and solutions in the context of clinical decision support, NTNU Trondheim, October 2017.

H Feuillatre, V Auffret, M Castro, H Le Breton, M Garreau and P Haigron, Similarity measures with attributes selection for Case-Based Reasoning in TAVI (PDF, 172KB), Surgetica, November 2017.

R McConville et al, Understanding the Quality of Calibrations for Indoor Localisation, IEEE 4th World Forum on Internet of Things, February 2018.

D R Hose, Personalisation of cardiovascular models for patient benefit: from EurValve to hypertension, Scandinavian/Baltic VPH workshop, June 2018.

R McConville et al, Online Heart Rate Prediction using Acceleration from a Wrist Worn Wearable, 2018 KDD Workshop on Machine Learning for Medicine and Healthcare, 2018.

D R Hose, Towards a Computational Decision Support System for Valve Interventions: the EurValve Project, Insigneo Showcase 2018, May 2018.

R McConville et al, Person identification and discovery with wrist worn accelerometer data, Proceedings of the European Symposium on Artificial Neural Networks, Computational Intelligence and Machine Learning, Apr 2018.

D R Hose, Model based personalised decision support for heart valve interventions; in session from the mitral circulation to large artery flows; challenges for clinical application, WCB2108, July 2018.

M Bubak et al, A Model Execution Environment for Valvular Heart Condition Simulations, VPH2018, September 2018.

D R Hose, Pre workshop talk, Meditec, Romania, October 2016.

M Bubak, ESOCC Conference 2016, ESOCC Conference 2016, 2016.

D R Hose, Invited talk, Institute of Physics and Medicine IPEN, September 2016.

D R Hose, Invited talk, Meeting with VP for Research, ANSYS - Dipankar Choudury, September 2016.

D R Hose, Invited talk, Virtual Physiological Human 2016 Conference, September 2016.

M Bubak, Conference organisation, CGW conference 2016, October 2016.

M Bubak, Data Management System for Investigation of Heart Valve Diseases, CS3 Workshop on Cloud Services for File Synchronisation and Sharing 2017, February 2017.

M Bubak, Talk, KUKDM 2017, March 2017.

M Bubak, Talk, Cloud and HPC in Biomedicine Meeting, April 2017.

M Bubak, Talk, International Conference on Computational Science, June 2017.

M Bubak, Talk, CGW 17, October 2017.

R Meiburg, Uncertainty in model-based treatment decision support: applied to aortic stenosis, CGW 17, October 2017.

R McConville et al, On-Board Feature Extraction from Acceleration Data for Activity Recognition, International Conference on Embedded Wireless Systems and Networks, February 2018.

R Meiburg, Uncertainty in model-based treatment decision support: applied to aortic stenosis, CMBBE2018, March 2018.

D R Hose, The EurValve Project, VPH-Case TA5, July 2018.

M Hoeijmakers, Real-Time Patient-Specific Transaortic Pressure Gradient Computation from Parameterized Aortic Valve Geometries, WCB2018, July 2018.

R Meiburg, Uncertainty in model-based treatment decision support: applied to aortic stenosis, WCB2018, July 2018.

D R Hose, Attendance, VPH2018, September 2018.

K Czechowicz, Patient specific 0D model of the systemic circulation to simulate the effects of valve stenosis and regurgitation, VPH2018, September 2018.

M Kelm, Eurvalve - Decision Support for Cardiovascular Disease, Biophysical Society Meeting Thematic Meeting, September 2018.

M Kelm, Computer assisted radiology and Surgery (CARS), Clinical Applications of Models in Cardiovascular Disease, June 2018.

M Bubak, Attendance, VPH2018, September 2018.

M Hoeijmakers, Towards Real-Time Transaortic Pressure Gradient Computation, VPH2018, September 2018.

Publications from the EurValve consortium members related to EurValve

C M Augustin, A Crozier, A Neic, A J Prassl, E Karabelas, T Ferreira da Silva, J F Fernandes, F Campos, T Kuehne and G Plank, Patient-specific modeling of left ventricular electromechanics as a driver for haemodynamic analysis (PDF, 638KB), Europace, 2016;18(suppl 4):iv121-iv129.

A Crozier, C M Augustin, A Neic, A J Prassl, M Holler, T E Fastl, A Hennemuth, K Bredies, T Kuehne, M J Bishop, S A Niederer and G Plank, Image-Based Personalisation of Cardiac Anatomy for Coupled Electromechanical Modeling (PDF, 5.2MB), Ann Biomed Eng. 2016; 44: 58–70.

M Pasic, S Sündermann, A Unbehaun, J Kempfert, S Jacobs and V Falk, Beating heart mitral valve surgery: results in 120 consecutive patients considered unsuitable for conventional mitral valve surgery (PDF, 373KB), Interact Cardiovasc Thorac Surg. 3 June 2017

S H Sündermann, M Czesla, J Kempfert, T Walther, P Nataf, E Raanani, S Jacobs, O Alfieri, F Maisano and V Falk, Results of mitral valve repair with an adjustable annuloplasty ring 2 years after implantation (PDF, 615KB), Heart Vessels, Jul;32(7):843-849

R Hopf, S H Sündermann, S Born, C E Ruiz, N M Van Mieghem, P P de Jaegere, F Maisano, V Falk and E Mazza, Postoperative analysis of the mechanical interaction between stent and host tissue in patients after transcatheter aortic valve implantation (PDF, 918KB), J Biomech, 28;53:15-21.

C Auffray, R Balling, I Barroso, L Bencze, M Benson and J Bergeron, Making sense of big data in health research: Towards an EU action plan (PDF, 1MB), Genome Med, 8(1), 7.